2010

Original Research Papers

Blin G, Nury D, Stefanovic S, Neri T, Guillevic O, Brinon B, Bellamy V, Rucker-Martin C, Barbry P, Bel A, Bruneval P, Cowan C, Pouly J, Mitalipov S, Gouadon E, Binder P, Hagege A, Desnos M, Renaud JF, Menasche P, Puceat M. A purified population of multipotent cardiovascular progenitors derived from primate pluripotent stem cells engrafts in postmyocardial infarcted nonhuman primates. J Clin Invest. 2010;120:1125-1139. Abstract

Bosl W, Li R. The role of noise and positive feedback in the onset of autosomal dominant diseases [published ahead of print June 29 2010]. BMC Systems Biology. 2010;4:93. Abstract

Cai Y, Jin J, Swanson SK, Cole MD, Choi SH, Florens L, Washburn MP, Conaway JW, Conaway RC. Subunit composition and substrate specificity of a MOF-containing histone acetyltransferase distinct from the male-specific lethal (MSL) complex. J Biol Chem. 2010;285:4268-4272. Abstract

D'Angiolella V, Donato V, Vijayakumar S, Saraf A, Florens L, Washburn MP, Dynlacht B, Pagano M. SCF(Cyclin F) controls centrosome homeostasis and mitotic fidelity through CP110 degradation. Nature. 2010;466:138-142. Abstract

Egli D, Eggan K. Recipient cell nuclear factors are required for reprogramming by nuclear transfer. Development. 2010;137:1953-1963. Abstract

Eldakak A, Rancati G, Rubinstein B, Paul P, Conaway V, Li R. Asymmetrically inherited multidrug resistance transporters are recessive determinants in cellular replicative ageing. Nat Cell Biol. 2010;12:799-805. Abstract

Fournier ML, Paulson A, Pavelka N, Mosley AL, Gaudenz K, Bradford WD, Glynn E, Li H, Sardiu ME, Fleharty B, Seidel C, Florens L, Washburn MP. Delayed correlation of mRNA and protein expression in rapamycin-treated cells and a role for Ggc1 in cellular sensitivity to rapamycin. Mol Cell Proteomics. 2010;9:271-284. Abstract

He J, Ma L, Kim S, Schwartz J, Santilli M, Wood C, Durnin MH, Yu CR. Distinct Signals Conveyed to Pheromone Concentrations to the Mouse Vomeronasal Organ. J Neurosci. 2010;30:7473-7483. Abstract

Helston RM, Box JA, Tang W, Baumann P. Schizosaccharomyces cryophilus sp. nov., a new species of fission yeast. FEMS Yeast Res. 2010;10:779-786. Abstract

Herz HM, Madden LD, Chen Z, Bolduc C, Buff E, Gupta R, Davuluri R, Shilatifard A, Hariharan IK, Bergmann A. The H3K27me3-demethylase dUTX is a suppressor of Notch- and Rb-dependent tumors in Drosophila [published ahead of print March 8 2010]. Mol Cell Biol. 2010. Abstract

Herz HM, Shilatifard A. The JARID2-PRC2 duality. Genes Dev. 2010;24:857-861. Abstract

Ikmi A, Gibson MC. Identification and in vivo characterization of NvFP-7R, a developmentally regulated red fluorescent protein of Nematostella vectensis. PLoS Biol. 2010;5:E11807. Abstract

Korfali N, Wilkie GS, Swanson SK, Srsen V, Batrakou DG, Fairley EA, Malik P, Zuleger N, Goncharevich A, de Las Heras J, Kelly DA, Kerr AR, Florens L, Schirmer EC. The leukocyte nuclear envelope proteome varies with cell activation and contains novel transmembrane proteins that affect genome architecture [published ahead of print August 11 2010] . Mol Cell Proteomics. 2010. Abstract

Kristensen DM, Kannan L, Coleman MK, Wolf YI, Sorokin A, Koonin EV, Mushegian A. A Low-Polynomial Algorithm For Assembling Clusters of Orthologous Groups From Intergenomic Symmetric Best Matches. Bioinformatics. 2010. Abstract

Kristensen DM, Mushegian AR, Dolja VV, Koonin EV. New dimensions of the virus world discovered through metagenomics. Trends Microbiol. 2010;18:11-19. Abstract

Kulesa PM, Gammill LS. Neural crest migration: Patterns, phases and signals. Dev Biol. 2010;344:566-568. Abstract

Lang C, Grava S, Finlayson M, Trimble R, Philippsen P, Jaspersen SL. Structural mutants of the spindle pole body cause distinct alteration of cytoplasmic microtubules and nuclear dynamics in multinucleated hyphae. Mol Biol Cell. 2010;21:753-766. Abstract

Lang C, Grava S, van den Hoorn T, Trimble R, Philippsen P, Jaspersen SL. Mobility, microtubule nucleation and structure of microtubule-organizing centers in multinucleated hyphae of Ashbya gossypii. Mol Biol Cell. 2010;21:18-28. Abstract

Lin C, Smith ER, Takahashi H, Lai KC, Martin-Brown S, Florens L, Washburn MP, Conaway JW, Conaway RC, Shilatifard A. AFF4, a component of the ELL/P-TEFb elongation complex and a shared subunit of MLL chimeras, can link transcription elongation to leukemia. Mol Cell. 2010;37:429-437. Abstract

Lu S, Goering M, Gard S, Xiong B, McNairn AJ, Jaspersen SL, Gerton JL. Eco1 is important for DNA damage repair in S. cerevisiae. Cell Cycle. 2010;9:1-13.

Lutes AA, Neaves WB, Baumann DP, Wiegraebe W, Baumann P. Sister chromosome pairing maintains heterozygosity in parthenogenetic lizards. Nature. 2010;464:283-286. Abstract

Mastushita-Sakai T, White-Grindley E, Samuelson J, Seidel C, Si K. Drosophila Orb2 targets genes involved in neuronal growth, synapse formation, and protein turnover. Proc Natl Acad Sci U S A. 2010;107:11987-11992. Abstract

McLennan R, Kulesa PM. Neuropilin-1 interacts with the second branchial arch microenvironment to mediate chick neural crest cell dynamics. Dev Dyn. 2010;239:1664-1673. Abstract

McLennan R, Teddy JM, Kasemeier-Kulesa JC, Romine MH, Kulesa PM. Vascular endothelial growth factor (VEGF) regulates cranial neural crest migration in vivo. Dev Biol. 2010;339:114-125. Abstract

Mogilner A, Rubinstein B. Actin disassembly 'clock' and membrane tension determine cell shape and turning: a mathematical model [published ahead of print April 26 2010]. J Phys Condensed Matter. 2010;22:194118.

Mohan M, Herz HM, Takahashi YH, Lin C, Lai KC, Zhang Y, Washburn MP, Florens L, Shilatifard A. Linking H3K79 trimethylation to Wnt signaling through a novel Dot1-containing complex (DotCom). Genes Dev. 2010;24:574-589. Abstract

Niakan KK, Ji H, Maehr R, Vokes SA, Rodolfa KT, Sherwood RI, Yamaki M, Dimos JT, Chen AE, Melton DA, McMahon AP, Eggan K. Sox17 promotes differentiation in mouse embryonic stem cells by directly regulating extraembryonic gene expression and indirectly antagonizing self-renewal. Genes Dev. 2010;24:312-326. Abstract

Nugent RL, Johnsson A, Fleharty B, Gogol M, Xue-Franzen Y, Seidel C, Wright AP, Forsburg SL. Expression profiling of S. pombe acetyltransferase mutants identifies redundant pathways of gene regulation. BMC Genomics. 2010;11:59. Abstract

Ozbudak EM, Tassy O, Pourquie O. Spatiotemporal compartmentalization of key physiological processes during muscle precursor differentiation. Proc Natl Acad Sci U S A. 2010;107:4224-4229. Abstract

Si K, Choi YB, White-Grindley E, Majumdar A, Kandel ER. Aplysia CPEB can form prion-like multimers in sensory neurons that contribute to long-term facilitation. Cell. 2010;140:421-435. Abstract

Smith KT, Martin-Brown SA, Florens L, Washburn MP, Workman JL. Deacetylase inhibitors dissociate the histone-targeting ING2 subunit from the Sin3 complex. Chem Biol (Lond). 2010;17:65-73. Abstract

Takeo S, Hawley RS, Aigaki T. Calcineurin and its regulation by Sra/RCAN is required for completion of meiosis in Drosophila. Dev Biol. 2010;344:957-967. Abstract

Xia S, Li X, Johnson T, Seidel C, Wallace DP, Li R. Polycystin-dependent fluid flow sensing targets histone deacetylase 5 to prevent the development of renal cysts. Development. 2010;137:1075-1084. Abstract

Xiong B, Lu S, Gerton JL. Hos1 Is a Lysine Deacetylase for the Smc3 Subunit of Cohesin [published ahead of print August 25 2010]. Curr Biol. 2010. Abstract

Zeng Y, Li H, Schweppe NM, Hawley RS, Gilliland WD. Statistical Analysis of Nondisjunction Assays in Drosophila [published ahead of print July 18 2010]. Genetics. 2010. Abstract

Zhang D, O'Neil M F, Cunningham MT, Fan F, Olyaee M, Li L. Abnormal Wnt signaling and stem cell activation in reactive lymphoid tissue and low-grade marginal zone lymphoma. Leuk Lymphoma. 2010;51:906-910. Abstract

Zhang SO, Mathur S, Hattem G, Tassy O, Pourquie O. Sex-dimorphic gene expression and ineffective dosage compensation of Z-linked genes in gastrulating chicken embryos. BMC Genomics. 2010;11:13. Abstract

Zhang Y, Wen Z, Washburn MP, Florens L. Refinements to label free proteome quantitation: how to deal with peptides shared by multiple proteins. Anal Chem. 2010;82:2272-2281. Abstract

Reviews, Commentaries or Chapters

Aulehla A, Pourquie O. Signaling gradients during paraxial mesoderm development. Cold Spring Harb Perspect Biol. 2010;2:a000869.. Abstract

Baumann P, Price C. Pot1 and telomere maintenance [published ahead of print May 19 2010] . FEBS Lett. 2010. Abstract

Benazeraf B, Francois P, Baker RE, Denans N, Little CD, Pourquie O. A random cell motility gradient downstream of FGF controls elongation of an amniote embryo. Nature. 2010;466:248-252. Abstract

Bose T, Gerton J. Cohesinopathies, gene expression, and chromatin organization. J Cell Biol. 2010;189:201-210. Abstract

Bryan TM, Baumann P. G-quadruplexes: from guanine gels to chemotherapeutics. Methods Mol Biol. 2010;608:1-16. Abstract

Eissenberg JC, Shilatifard A. Histone H3 lysine 4 (H3K4) methylation in development and differentiation. Dev Biol. 2010;339:240-249. Abstract

Haralalka S, Abmayr SM. Myoblast Fusion in Drosophila [published ahead of print June 26 2010]. Exp Cell Res. 2010. Abstract

Herz HM, Shilatifard A. The JARID2-PRC2 duality. Genes Dev. 2010;24:857-861. Abstract

Ichida JK, Kiskinis E, Eggan K. Shushing down the epigenetic landscape towards stem cell differentiation. Development [published ahead of print June 16 2010] . 2010. Abstract

Kim JH, Workman JL. Histone acetylation in heterochromatin assembly. Genes Dev. 2010;24:738-740. Abstract

Kiskinis E, Eggan K. Progress toward the clinical application of patient-specific pluripotent stem cells. J Clin Invest. 2010;120:51-59. Abstract

Krumlauf R, Levine M. Gene expression and development. Special introduction. Dev Biol. 2010;339:224. Abstract

Kulesa PM, Bailey CM, Cooper C, Fraser SE. In ovo live imaging of avian embryos. Cold Spring Harb Protoc. 2010;2010:pdb prot5446. Abstract

Kulesa PM, Bailey CM, Kasemeier-Kulesa JC, McLennan R. Cranial neural crest migration: New rules for an old road. Dev Biol. 2010;344:543-554. Abstract

Li L, Clevers H. Coexistence of quiescent and active adult stem cells in mammals. Science. 2010;327:542-545. Abstract

Li R, Bowerman B. Symmetry breaking in biology. Cold Spring Harb Perspect Biol. 2010;2:a003475. Abstract

Pavelka N, Rancati G, Li R. Dr. Jekyll and Mr. Hyde: Role of Aneuploidy in Cellular Adaptation and Cancer [published ahead of print July 23, 2010]. Curr Opin Cell Biol. 2010. Abstract

Perry JM, Li L. Functional assays for hematopoietic stem cell self-renewal. Methods Mol Biol. 2010;636:45-54. Abstract

Sarthy JF, Baumann P. Apollo-Taking the Lead in Telomere Protection. Mol Cell. 2010;39:489-491. Abstract

Shen R, Xie T. NANOS: a germline stem cell's Guardian Angel. J Mol Cell Biol. 2010;2:76-77. Abstract

Steen J, Morrison JA, Kulesa PM. Multi-position photoactivation and multi-time acquisition for large-scale cell tracing in avian embryos. Cold Spring Harb Protoc. 2010;2010:pdb prot5447. Abstract

Suganuma T, Workman JL. Features of the PHF8/KIAA1718 histone demethylase. Cell Res. 2010;20:861-862. Abstract

Suganuma T, Workman JL. WD40 repeats arrange histone tails for spreading of silencing. J Mol Cell Biol. 2010;2:81-83. Abstract

Sugimura R, Li L. Shifting in balance between osteogenesis and adipogenesis substantially influences hematopoiesis. J Mol Cell Biol. 2010;2:61-62. Abstract

Takahashi YH, Shilatifard A. Structural basis for H3K4 trimethylation by yeast Set1/COMPASS. Adv Enzyme Regul. 2010;50:104-110. Abstract

Tenzen T, Zembowicz F, Cowan CA. Genome modification in human embryonic stem cells. J Cell Physiol. 2010;222:278-281. Abstract

Trainor PA. Craniofacial birth defects: The role of neural crest cells in the etiology and pathogenesis of Treacher Collins syndrome and the potential for prevention. Am J Med Genet A. 2010. Abstract

Vilhais-Neto GC, Maruhashi M, Smith KT, Vasseur-Cognet M, Peterson AS, Workman JL, Pourquie O. Rere controls retinoic acid signalling and somite bilateral symmetry. Nature. 2010;463:953-957. Abstract

Weake VM, Workman JL. Inducible gene expression: diverse regulatory mechanisms. Nat Rev Genet. 2010;11:426-437. Abstract

Xiong B, Gerton JL. Regulators of the cohesin network. Annu Rev Biochem. 2010;79:131-153. Abstract

Yin T, Li L. Fountain of Youth: aged blood-forming stem cells could be rejuvenated by young microenvironment. Cell Res. 2010;20:504-505. Abstract

Zeitlinger J, Stark A. Developmental gene regulation in the era of genomics. Dev Biol. 2010;339:230-239. Abstract

Zhang SO, Box AC, Xu N, Le Men J, Yu J, Guo F, Trimble R, Mak HY. Genetic and dietary regulation of lipid droplet expansion in Caenorhabditis elegans. Proc Natl Acad Sci U S A. 2010;107:4640-4645. Abstract

Book

Baumann P. G-Quadruplex DNA. Vol 608: Springer Verlag, Humana Press; 2010.

Li R, Bowerman B. Symmetry Breaking in Biology, 1st ed. Cold Spring Harbor, N.Y., Cold Spring Harbor Laboratory Press. 2010.